PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BL_2E125A702.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 277aa    MW: 31463.2 Da    PI: 10.0233
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BL_2E125A702.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind104.58.7e-331372282102
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            Fl+k+++++ d++++ ++sw + gnsfvv+d++ fa  +Lp++Fkhsnf+SFvRQLn+YgF+k++ ++         weF+++ F +g
  Traes_4BL_2E125A702.1 137 FLTKTFDLVADPATDGVVSWGRAGNSFVVWDPHLFAAVLLPRFFKHSNFSSFVRQLNTYGFRKIDPDR---------WEFANEGFIRG 215
                            9****************************************************************999.........*********** PP

                            XXXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkks 102
                            +++ll+ ikr++s
  Traes_4BL_2E125A702.1 216 QRQLLKMIKRRRS 228
                            **********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004157.4E-59133226IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.0E-36133226IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.03E-35133226IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.7E-30137226IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-18137160IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-18175187IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340176200IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-18188200IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
ATRPRRPEAS EPAGHERAAL PRTFRLIPRP VALAPVLGRS IYQRAPPTFP RKESSQPKTT  60
CVGCHCAKQF FGFFRLRQEI AGCLLARPRG GMDRVLLPVR VKEEWPPPLP EEEEELEHGG  120
LAPRPMEGLH ETGPPPFLTK TFDLVADPAT DGVVSWGRAG NSFVVWDPHL FAAVLLPRFF  180
KHSNFSSFVR QLNTYGFRKI DPDRWEFANE GFIRGQRQLL KMIKRRRSLS YLPSSQQQAL  240
GSCLEVGQFG FDEEIEVLKR DKNALLAEVV KLRQEQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A8e-2613222615120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219225LKMIKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0611930.0KF061193.1 Triticum aestivum heat shock factor HsfA2d (HSFA2d) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558764.21e-97PREDICTED: LOW QUALITY PROTEIN: heat stress transcription factor A-2d
SwissprotQ8H7Y61e-104HFA2D_ORYSJ; Heat stress transcription factor A-2d
TrEMBLW5E2C20.0W5E2C2_WHEAT; Uncharacterized protein
STRINGMLOC_6206.31e-103(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.13e-79heat shock transcription factor A2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]